PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3108_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 469aa    MW: 51424.7 Da    PI: 4.7127
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3108_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35.1e-12304349555
                    HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                    h+++Er RR++i +++ +L+el+P++      K +Ka++L + ++Y+k Lq
  Neem_3108_f_2 304 HSIAERLRREKIAERMKKLQELIPNS-----NKTDKASMLDEIIDYVKFLQ 349
                    99***********************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-17297359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.89E-13297353No hitNo description
PROSITE profilePS5088817.307299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16301358IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-9304349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-13305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MDEYIDRCFS SSSWSDANAK ERSSWDYYEP VQQNRVLTNS LEVYEDDRKN SPGSIIRANH  60
IMDSLAVQYT SSLVIGGELE YGIDKNLDFQ EARHERDDQN CNGNLSSSEK MNGSLELGNF  120
GLRYDTAIPT LDSVNLSSPK RLPSVGGMQS SLPFIDGVQV GGNGGELSEV QRSLRDLQTY  180
SPSPELWLPP TYDEVSSLSP VMGQQRIQGF CLQGVNDIDT IGNRYVGMDK ILQFDNLPAS  240
IATKGKQGLQ NHALSCFSAE PQTTTTTVGL PSLQQNASAI STGVSNGTGK PRVRARRGQA  300
TDPHSIAERL RREKIAERMK KLQELIPNSN KTDKASMLDE IIDYVKFLQL QVKVLSMSRL  360
GAAGAVLPLI TDGQAEGANG LSFSPQSDQG VEISLNPDQI AFEEEIVKLM ESNVTMAMQY  420
LQSKGLCLMP IALAAAISSS GKAFEEKHKL GFDWEKTTST FLLKEGLES
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474565.10.0uncharacterized protein LOC102611966 isoform X1
RefseqXP_015384588.10.0uncharacterized protein LOC102611966 isoform X1
TrEMBLA0A2H5NBL40.0A0A2H5NBL4_CITUN; Uncharacterized protein
STRINGXP_006474565.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16266914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58010.12e-60LJRHL1-like 3