PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31107_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ARR-B
Protein Properties Length: 254aa    MW: 28314.6 Da    PI: 5.9731
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31107_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like61.12.2e-19197246151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                     kp+l Wt+eLH+rF++a+  L G++ A Pk+il+ m+v+gL  e++ SHLQ
  Neem_31107_f_2 197 KPKLIWTHELHNRFLQAIGVL-GIDGAHPKKILQYMNVPGLKKENISSHLQ 246
                     79*******************.***************************** PP
2Response_reg493.3e-17241321109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vd + + + +l ++l   gy +v++a+ +++al +++e++   +l+l    +p+md +ell++  e + klpi++++a ++e+d+l  l  G
  Neem_31107_f_2  24 VLLVDGDSTCLAILSKMLHWFGY-KVNTAKRATDALCIIQEREgeLNLLLAEAHLPDMDKYELLETVGETS-KLPIVIMSADDNENDMLGGLFKG 116
                     89*********************.***************999989**********************8877.9********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a  +l+Kp +++++ +
  Neem_31107_f_2 117 AAFYLVKPLSMNDIKN 132
                     **********999976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23002.3E-2521169No hitNo description
SMARTSM004485.0E-1322134IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.56E-2222138IPR011006CheY-like superfamily
PROSITE profilePS5011028.5123138IPR001789Signal transduction response regulator, receiver domain
PfamPF000728.2E-1324132IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.56E-1425138No hitNo description
Gene3DG3DSA:1.10.10.602.7E-19195246IPR009057Homeodomain-like
SuperFamilySSF466894.12E-13195248IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-17197247IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MSSKKAISVE SGGNALLLPM SVSVLLVDGD STCLAILSKM LHWFGYKVNT AKRATDALCI  60
IQEREGELNL LLAEAHLPDM DKYELLETVG ETSKLPIVIM SADDNENDML GGLFKGAAFY  120
LVKPLSMNDI KNLWQFAFIK KTDAMTDAMV TAERLSSLSS DDTDDQMLPN KGKDAKRKKE  180
MDKNQKEDND DYSVQKKPKL IWTHELHNRF LQAIGVLGID GAHPKKILQY MNVPGLKKEN  240
ISSHLQVCTP ETDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-16193246154ARR10-B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445166.21e-115two-component response regulator ARR2 isoform X1
RefseqXP_006491000.11e-115two-component response regulator ARR2 isoform X1
RefseqXP_024044066.11e-115two-component response regulator ARR2 isoform X2
TrEMBLA0A2H5NPH31e-113A0A2H5NPH3_CITUN; Uncharacterized protein (Fragment)
TrEMBLV4U8801e-114V4U880_9ROSI; Uncharacterized protein
STRINGXP_006491000.11e-114(Citrus sinensis)
STRINGXP_006445166.11e-114(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1721079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-48response regulator 2