PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31131_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 347aa    MW: 38824.7 Da    PI: 10.7714
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31131_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.41.4e-07287330243
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      g W++ Ed  l++a k ++++   +W++Ia+ ++ gR+   c  r
   Neem_31131_f_1 287 GGWSAGEDIALLNALKAFPKDapmRWEKIAAAVP-GRSKAACMKR 330
                      56********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.5E-5285337IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-10285333IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-6287330IPR009057Homeodomain-like
PfamPF002491.3E-6287330IPR001005SANT/Myb domain
PROSITE profilePS500906.969287330IPR017877Myb-like domain
CDDcd001675.09E-6289330No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEFLDEDTRP RFLFQSRPQP ASLENNEDSD HQKPTKLFLF IFISISCFLI ILSFFFLQSE  60
PLKSILLWLS LSLMVGPFAP SHLTGGHTRV GYGRVIENPV QDQKIEPEVK KKPQKNRSLV  120
HKAQDFHVSS VPSGENSNGS SGSAAKEKKV EALEQKGNRG GKNVVFMSVL FRVGRIQMGQ  180
VGPRRKRRKL KLWSRRGIGG MVKNPVGKPK RWEVIAEAFN GRHRVESVIK KAKELGEKKV  240
DDSDSYGQFL KNRKALDIRI QNKNEGLVME NGEESRKESK ENVGVGGGWS AGEDIALLNA  300
LKAFPKDAPM RWEKIAAAVP GRSKAACMKR VADLKRDFRS SKAGAES
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182189PRRKRRKL
2185195KRRKLKLWSRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436809.11e-114transcription factor MAMYB
RefseqXP_006485375.11e-114transcription factor MAMYB
TrEMBLA0A2H5PCB11e-113A0A2H5PCB1_CITUN; Uncharacterized protein
TrEMBLV4VCG31e-113V4VCG3_9ROSI; Uncharacterized protein
STRINGXP_006485375.11e-114(Citrus sinensis)
STRINGXP_006436809.11e-114(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM126921011
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.18e-55MYB_related family protein