PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31372_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 108aa MW: 12590.5 Da PI: 10.0613

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31372_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	26.5	7.6e-09	38	88	271	320
GRAS 271 l.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320 l +a++p++++er+ re+lgr+++nv+ ce er+ + et+++W+ ++ Neem_31372_f_1 38 LrHATVPSKDQERMIFGREVLGRNAMNVIPCEVLERTSNPETYKQWHFLID 88 44899*****************************************97765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	2.6E-6	38	88	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MAKYNQMRTH MPLKQVRQQS SPFDDGTKGW HITSLMALRH ATVPSKDQER MIFGREVLGR 60 NAMNVIPCEV LERTSNPETY KQWHFLIDEN SKQMLQGWQG KVVQALSF

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006488667.1	2e-20	scarecrow-like protein 9
Refseq	XP_024035700.1	2e-20	scarecrow-like protein 9
STRING	XP_006488667.1	7e-20	(Citrus sinensis)
STRING	XP_006424856.1	7e-20	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	2e-19	GRAS family protein