PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31406_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 247aa MW: 27107.1 Da PI: 7.0865

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31406_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.5	0.00028	131	169	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Neem_31406_f_1 131 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 169 6678889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.814	119	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.31E-6	129	173	No hit	No description
SuperFamily	SSF47459	4.58E-10	129	182	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-8	133	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MVDGEDKNGM GHFQTKKLEN WEEQMLHQTS STSVVNVKQE NPANNYFYGH ANEEFQATTK 60 PTWSQVMPAS SPKSCVTSFS SNMLDFSSNK ADGRHPPPDR SSECNSTASG GAAKKARVQS 120 SSSTQSTFKV RKEKLGDRIT ALHQLVSPFG KTDTASVLLE AIGYIRFLQS QIEVQGERNC 180 IFPEDPGQLL NDNCMKRKGA PDQESHEEPK KDLRSRGLCL VPVSCTLQVG SDNGADYWAP 240 ALGGGFR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009836	3e-33	AP009836.1 Lotus japonicus genomic DNA, clone: LjT33L17, TM1006b, complete sequence.
GenBank	AP015044	3e-33	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
GenBank	FJ379768	3e-33	FJ379768.1 Lotus japonicus putative basic helix-loop-helix protein BHLH16 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002284145.1	1e-150	PREDICTED: transcription factor bHLH68
Swissprot	Q8S3D1	3e-88	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A438IHV2	1e-149	A0A438IHV2_VITVI; Transcription factor bHLH68
TrEMBL	D7TBK3	1e-149	D7TBK3_VITVI; Uncharacterized protein
STRING	VIT_11s0016g03560.t01	1e-150	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1872	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-90	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]