PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31659_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 280aa MW: 31666.7 Da PI: 7.8623

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31659_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.4	4.6e-07	168	194	4	30
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+++Er RR++iN+++ L++l+P + Neem_31659_f_1 168 SHSIAERVRREKINKKMRCLQDLVPGC 194 8************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.93E-8	162	224	No hit	No description
SuperFamily	SSF47459	3.53E-12	162	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-12	164	231	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.233	164	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-4	170	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MADFGHNMQG LRPCQPFSEM GMNMEMLKQF AELKPSMLQN FNLPFPQSPL ETPLAHQQAE 60 FPGSCTRNSC FISFQSDSLI AAVPGVHTIT GNGSVSHESR KREVAEQSTS FSKNISSSAS 120 TSEFQGHTNK NRKNRSGKGK KARNSEKEEG KPEEIIHVRA KRGQATDSHS IAERVRREKI 180 NKKMRCLQDL VPGCHKVEPV FFFLFIWMLE EIINYVHSLQ NQVEFLSMEL AAACSSHDLN 240 FETQSSRKAQ GTNSHEAVEM EKWAKDAYGE YNCFHSTWSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430772.1	1e-135	transcription factor bHLH75
TrEMBL	V4STF1	1e-133	V4STF1_9ROSI; Uncharacterized protein
STRING	XP_006430772.1	1e-134	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17213	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	2e-42	bHLH family protein