PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31746_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 136aa MW: 15728.8 Da PI: 9.9483

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31746_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	126.8	1.8e-39	9	115	1	105
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL+kkv+ + ++l +vi+evd++k+ePwdL+ k ++ + ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ Neem_31746_f_1 9 VPPGFRFHPTDEELLYYYLRKKVSYEAIDL-DVIREVDLNKLEPWDLKdKcRIGSgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI 102 69**************************.9***********943444443456******************************** PP NAM 93 lskkgelvglkkt 105 + ++++ +g++kt Neem_31746_f_1 103 HLSNSKRIGMRKT 115 *********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-40	5	126	IPR003441	NAC domain
PROSITE profile	PS51005	36.359	9	136	IPR003441	NAC domain
Pfam	PF02365	1.1E-18	10	115	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MAGNGQLSVP PGFRFHPTDE ELLYYYLRKK VSYEAIDLDV IREVDLNKLE PWDLKDKCRI 60 GSGPQNEWYF FSHKDKKYPT GTRTNRATTA GFWKATGRDK AIHLSNSKRI GMRKTGNDCR 120 LLESNWKGQG HPPQQL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-32	6	115	14	119	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-32	6	115	14	119	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-32	6	115	14	119	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-32	6	115	14	119	NO APICAL MERISTEM PROTEIN
3swm_A	2e-32	6	115	17	122	NAC domain-containing protein 19
3swm_B	2e-32	6	115	17	122	NAC domain-containing protein 19
3swm_C	2e-32	6	115	17	122	NAC domain-containing protein 19
3swm_D	2e-32	6	115	17	122	NAC domain-containing protein 19
3swp_A	2e-32	6	115	17	122	NAC domain-containing protein 19
3swp_B	2e-32	6	115	17	122	NAC domain-containing protein 19
3swp_C	2e-32	6	115	17	122	NAC domain-containing protein 19
3swp_D	2e-32	6	115	17	122	NAC domain-containing protein 19
4dul_A	2e-32	6	115	14	119	NAC domain-containing protein 19
4dul_B	2e-32	6	115	14	119	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.
UniProt	Transcription regulator. Together with BRN1 and BRN2, regulates cellular maturation of root cap. Represses stem cell-like divisions in the root cap daughter cells, and thus promotes daughter cell fate. Inhibits expression of its positive regulator FEZ in a feedback loop for controlled switches in cell division plane. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269\|PubMed:19081078, ECO:0000269\|PubMed:20197506}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By FEZ in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR605189	4e-60	KR605189.1 Manihot esculenta NAC transcription factors 51 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002316163.2	7e-80	protein SOMBRERO
Refseq	XP_011014561.1	7e-80	PREDICTED: protein SOMBRERO-like
Refseq	XP_011014569.1	7e-80	PREDICTED: protein SOMBRERO-like
Refseq	XP_022751588.1	8e-80	protein SOMBRERO
Refseq	XP_024466050.1	7e-80	protein SOMBRERO
Swissprot	Q5Z6B6	3e-72	NAC76_ORYSJ; NAC domain-containing protein 76
Swissprot	Q9MA17	1e-71	SMB_ARATH; Protein SOMBRERO
TrEMBL	A0A2P5WUD6	1e-79	A0A2P5WUD6_GOSBA; Uncharacterized protein
STRING	Gorai.004G268500.1	9e-79	(Gossypium raimondii)
STRING	POPTR_0010s18420.1	3e-79	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6653	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	8e-64	NAC family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Fendrych M, et al. Programmed cell death controlled by ANAC033/SOMBRERO determines root cap organ size in Arabidopsis. Curr. Biol., 2014. 24(9): p. 931-40 [PMID:24726156] Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Kamiya M, et al. Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis. Development, 2016. 143(21): p. 4063-4072 [PMID:27803060]