PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3188_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

TCP

Protein Properties

Length: 188aa MW: 20430.8 Da PI: 4.3264

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3188_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	108.3	1.2e-33	35	99	6	70
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 + ++++h+kv+gRdRR+Rl+ caar+F+L++eLGf++d++ti WLlqqa+pai+++tgt++s + Neem_3188_f_1 35 KAQKDRHSKVEGRDRRIRLPPMCAARVFQLTRELGFKTDGETIAWLLQQAEPAIIAATGTGASLE 99 679*********************************************************54433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.5E-29	36	103	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.667	37	91	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MDSERELTGS SSPKKAKKPK PNSPSTASGS NTSSKAQKDR HSKVEGRDRR IRLPPMCAAR 60 VFQLTRELGF KTDGETIAWL LQQAEPAIIA ATGTGASLEA SDNLTAPTPD DAVAGDLVPL 120 VTSPSLLLDY TPTLNYCEGK LLSPTEDIFQ DSDFDLIANF DMAFAVKELA MFQPKLPNEE 180 NNDEDQED

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022753605.1	2e-48	transcription factor TCP7-like
TrEMBL	A0A061H0A3	2e-43	A0A061H0A3_THECC; Transcription factor-like protein
STRING	EOY34434	3e-44	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-31	TCP family protein