PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_31967_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 120aa    MW: 13201.5 Da    PI: 8.672
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_31967_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.73.5e-0719561254
                    HHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 12 RRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  Neem_31967_f_1 19 RRERIAERIRALQELVPSvN------KTDRAAMLDEIVDYVKFL 56
                    9*****************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.058756IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-51862IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-111966IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-41956IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-112065IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MKPLQVLCLI GGCHVGVLRR ERIAERIRAL QELVPSVNKT DRAAMLDEIV DYVKFLRLQV  60
KVLSMSRLGG AGAVAPLVTD IPLSSVESIE LSLCCRMNLV KVEETNQLGR NGQTTAQSDR
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022954052.13e-40transcription factor UNE12
RefseqXP_027935976.13e-40transcription factor UNE12-like
RefseqXP_028185307.13e-40transcription factor UNE12-like
SwissprotO227682e-29UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A392M1P52e-39A0A392M1P5_9FABA; Transcription factor UNE12-like (Fragment)
STRINGevm.model.supercontig_52.972e-39(Carica papaya)
STRINGXP_004495148.11e-39(Cicer arietinum)
STRINGGLYMA10G03690.12e-39(Glycine max)
STRINGXP_007144689.12e-39(Phaseolus vulgaris)
STRINGLus100147263e-40(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-31bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]