PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_31982_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 249aa MW: 28053.9 Da PI: 9.4886

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_31982_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.8	3e-18	86	197	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..........................rergferspkqCkekwenlnkrykkikegek 69 +W++ + +L+ea++e+ ++l+rg+l++ +Weev++++ ++++ +s +qCk+k++nl+kryk + ++++ Neem_31982_f_1 86 EWSDTAIACLLEAYTEKFNQLNRGNLRGRDWEEVAEAIiatvvminrnsrkrgkdnsnssndkqQQQKAWKSVEQCKNKIDNLKKRYKVELQRMN 180 5***********************************************************99999999**************9998888 PP trihelix 70 krtsessstcpyfdqlea 87 + +ss++ +f+q+ea Neem_31982_f_1 181 SS-GSASSNWHWFKQIEA 197 85.56777*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.9E-15	84	198	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MASQDYPLIA DPHAPTHLPQ TADSTTADYY AHSAFTTNEN SDADKSVSGS GSGSKRNPYY 60 YKKQKTGNTS ETASDYRVDY RKDREEWSDT AIACLLEAYT EKFNQLNRGN LRGRDWEEVA 120 EAIIATVVMI NRNSRKRGKD NSNSSNDKQQ QQKAWKSVEQ CKNKIDNLKK RYKVELQRMN 180 SSGSASSNWH WFKQIEAIMG SINNNSNLVN KSIVAETEER TGGAAASPIA VSPLTRQAKR 240 YMPFYNISV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006436611.1	1e-101	uncharacterized protein LOC18045004
TrEMBL	A0A067EJI5	1e-100	A0A067EJI5_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QK41	1e-100	A0A2H5QK41_CITUN; Uncharacterized protein (Fragment)
TrEMBL	V4TJA0	1e-100	V4TJA0_9ROSI; Uncharacterized protein
STRING	XP_006436611.1	1e-101	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM23002	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10030.2	2e-40	Trihelix family protein