PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_32037_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

FAR1

Protein Properties

Length: 215aa MW: 24239.7 Da PI: 5.8226

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_32037_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.5	8.5e-27	93	181	2	89
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +Y++YAk+vGF +r+ + ++s r+g i++r+f C+keg+ ++kk+ + + r++r+ tr gCka+++v+kek+gkw+vtkle+ H+H+l Neem_32037_f_1 93 YYDAYAKRVGFVIRVGNCHRSCRDGLIVSRRFLCNKEGFCVNNKKTkRLEVRKRREITREGCKAMIMVRKEKSGKWVVTKLETAHSHPL 181 8************************************98888873567788999*****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.6E-26	93	181	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEYDQLSICV VVNFTASVNG DFGLISDSAE IEPEADIDNK MIEIMAGKDI CMTEGGELID 60 FYDGRELIVN EVDGNAEPYI GMEFESEETA MVYYDAYAKR VGFVIRVGNC HRSCRDGLIV 120 SRRFLCNKEG FCVNNKKTKR LEVRKRREIT REGCKAMIMV RKEKSGKWVV TKLETAHSHP 180 LGIPAGKGRR VTVQARPQVS STFYLFLEGQ NLSDS

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028119173.1	7e-96	protein FAR1-RELATED SEQUENCE 6-like isoform X1
Swissprot	Q9SZL8	7e-25	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2R6QJP0	7e-98	A0A2R6QJP0_ACTCH; Protein FAR1-RELATED SEQUENCE like (Fragment)
STRING	XP_010268168.1	6e-87	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM25913	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-38	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]