PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3211_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 207aa MW: 22832.5 Da PI: 8.8546

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3211_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.3	2.2e-10	122	161	4	40
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 k+ rr+++NReAAr+sR+RKka++++Le+ + ++Le+ Neem_3211_f_4 122 QKALRRLAQNREAARKSRLRKKAYVQQLENsrlRLAQLEQ 161 5889*************************83334444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-8	115	165	No hit	No description
SMART	SM00338	0.0016	119	172	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.301	121	165	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	8.6E-7	123	162	IPR004827	Basic-leucine zipper domain
CDD	cd14708	9.66E-23	123	175	No hit	No description
SuperFamily	SSF57959	8.04E-7	123	165	No hit	No description
PROSITE pattern	PS00036	0	126	141	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MQSFKPAPTN PEIFCHSSFF LRFSWVDEKS IGCSAEIVAT TGPGGCLDTG QFMYQKGTTI 60 GSSLGNGHIE NWGESGMADN SQQTDTSTDV DTDDKNQIHG VKRRAPAVLD SMDQSKPKTG 120 DQKALRRLAQ NREAARKSRL RKKAYVQQLE NSRLRLAQLE QELQRARQQG IFIATGVSGD 180 HGHSVAGNGR DSDIVERIFI YAMKANL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM442138	1e-32	AM442138.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X255602.8, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007046280.2	1e-89	PREDICTED: transcription factor HBP-1b(c38) isoform X1
Refseq	XP_017971464.1	1e-89	PREDICTED: transcription factor HBP-1b(c38) isoform X2
Swissprot	Q9SX27	2e-41	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A061ECH8	3e-88	A0A061ECH8_THECC; BZIP transcription factor family protein isoform 1
STRING	EOY02112	5e-89	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	2e-27	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]