PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_32209_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 583aa MW: 65971.4 Da PI: 7.662

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_32209_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	61.7	1.5e-19	19	96	277	355
GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355 ++seer +E + +grei+ +va+eg er+erhe++++W r+++aGFkpv+l + +++ak +++ ++ dgy++ +e+ Neem_32209_f_1 19 KDSEERLILEGM-FGREIEHIVANEGLEREERHERYARWMVRFGRAGFKPVQLWVNPMEDAKQMVKAYGRDGYKIVNEK 96 578999999999.*************************************************************99775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	13.973	1	95	IPR005202	Transcription factor GRAS
Pfam	PF03514	5.3E-17	19	96	IPR005202	Transcription factor GRAS
SuperFamily	SSF53335	2.84E-87	166	207	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
PROSITE profile	PS51626	111.879	167	583	IPR002905	tRNA methyltransferase, Trm1
Pfam	PF02005	8.6E-97	170	568	IPR002905	tRNA methyltransferase, Trm1
Gene3D	G3DSA:3.40.50.150	1.1E-11	283	395	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	2.84E-87	284	487	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
CDD	cd02440	6.71E-4	286	388	No hit	No description
SuperFamily	SSF53335	2.84E-87	514	567	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008033	Biological Process	tRNA processing
GO:0003723	Molecular Function	RNA binding
GO:0004809	Molecular Function	tRNA (guanine-N2-)-methyltransferase activity

Sequence ? help Back to Top
Protein Sequence Length: 583 aa Download sequence Send to blast
MFGREIEHIV ANEGLERLKD SEERLILEGM FGREIEHIVA NEGLEREERH ERYARWMVRF 60 GRAGFKPVQL WVNPMEDAKQ MVKAYGRDGY KIVNEKAITG ARKLRRNLFL TRSKTRQGFL 120 FFFLQSVSSV SNQRIKERRR EEEETQKLKV HAKEEIGGSM EDLNDYTIIK EGEAEILMHA 180 KNEVFYNKTQ VNNRDISIAV LRTFISKRKE EHEAVLLKRT TATPKVSEKD AVQEAPDKSD 240 SVANDEKSNG EVERSEGMCE DEACGTSEEP TKTTERKGPG QLKPPRVLEA LSASGLRALR 300 YAREVEGISQ VVALDNDKVS VEACRRNIKF NGSVACSKVE SHFADARVYM LTHPKEFDVV 360 DLDPYGSPSV FLDSAVQSVV DGGMLMCTAT DMAVLCGGNG EVCYSKYGSY PLRGKYCHEM 420 ALRILLACIE SHANRYKRYI VPVLSVQMDF YVRVFVRIYT SASAMKNTPL KLSYVYQCIG 480 CDSFHLQPLG RTASNKNNSV RYLPGFGPVV PQACSDCGKK FNMGGPIWSA PIHDQEWVTS 540 ILLDVKSMKD RYPAYDRISA VLTTISEVHL LFAFTFLSSD IIF

Sequence ? help Back to Top

Protein Sequence Length: 583 aa Download sequence Send to blast

MFGREIEHIV ANEGLERLKD SEERLILEGM FGREIEHIVA NEGLEREERH ERYARWMVRF  60
GRAGFKPVQL WVNPMEDAKQ MVKAYGRDGY KIVNEKAITG ARKLRRNLFL TRSKTRQGFL  120
FFFLQSVSSV SNQRIKERRR EEEETQKLKV HAKEEIGGSM EDLNDYTIIK EGEAEILMHA  180
KNEVFYNKTQ VNNRDISIAV LRTFISKRKE EHEAVLLKRT TATPKVSEKD AVQEAPDKSD  240
SVANDEKSNG EVERSEGMCE DEACGTSEEP TKTTERKGPG QLKPPRVLEA LSASGLRALR  300
YAREVEGISQ VVALDNDKVS VEACRRNIKF NGSVACSKVE SHFADARVYM LTHPKEFDVV  360
DLDPYGSPSV FLDSAVQSVV DGGMLMCTAT DMAVLCGGNG EVCYSKYGSY PLRGKYCHEM  420
ALRILLACIE SHANRYKRYI VPVLSVQMDF YVRVFVRIYT SASAMKNTPL KLSYVYQCIG  480
CDSFHLQPLG RTASNKNNSV RYLPGFGPVV PQACSDCGKK FNMGGPIWSA PIHDQEWVTS  540
ILLDVKSMKD RYPAYDRISA VLTTISEVHL LFAFTFLSSD IIF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2dul_A	1e-34	282	548	46	297	N(2),N(2)-dimethylguanosine tRNA methyltransferase
2ejt_A	1e-34	282	548	46	297	N(2),N(2)-dimethylguanosine tRNA methyltransferase
2eju_A	1e-34	282	548	46	297	N(2),N(2)-dimethylguanosine tRNA methyltransferase
2ytz_A	1e-34	282	548	46	297	N(2),N(2)-dimethylguanosine tRNA methyltransferase
2ytz_B	1e-34	282	548	46	297	N(2),N(2)-dimethylguanosine tRNA methyltransferase
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Functional Description ? help Back to Top
Source	Description
UniProt	Dimethylates a single guanine residue at position 26 of most tRNAs using S-adenosyl-L-methionine as donor of the methyl groups. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006482428.1	0.0	probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
Swissprot	Q9SRU7	0.0	TRM2_ARATH; Probable tRNA (guanine(26)-N(2))-dimethyltransferase 2
TrEMBL	A0A2H5P1P2	0.0	A0A2H5P1P2_CITUN; tRNA (guanine(26)-N(2))-dimethyltransferase
STRING	XP_006482428.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G50420.1	2e-11	scarecrow-like 3

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]