PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_32412_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

SBP

Protein Properties

Length: 166aa MW: 18868.1 Da PI: 8.5821

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_32412_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	135.6	1.5e-42	65	142	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C ve+C adl++a++yh+rhkvCe+hskapvv+v+gl+qrfCqqCsrfhelsefDe+krsCrrrLa+hnerrrk++a Neem_32412_f_3 65 CCVVEKCGADLTDARRYHKRHKVCEIHSKAPVVIVAGLRQRFCQQCSRFHELSEFDESKRSCRRRLAGHNERRRKSTA 142 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.6E-34	60	127	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.505	63	140	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.18E-39	64	144	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.6E-32	66	139	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MDAASLEAKR LLKEKTIKEC FVEDDMDNEM EEEEEGGGDN YADDEKKKRV SGRRGPGAGG 60 VSTPCCVVEK CGADLTDARR YHKRHKVCEI HSKAPVVIVA GLRQRFCQQC SRFHELSEFD 120 ESKRSCRRRL AGHNERRRKS TAETTGESRQ QLSLQGNSSY RRSQTK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	7e-35	58	139	3	84	squamosa promoter binding protein-like 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006451806.1	5e-67	squamosa promoter-binding-like protein 13
Refseq	XP_006464784.1	5e-67	squamosa promoter-binding-like protein 13
Swissprot	Q38740	2e-44	SBP2_ANTMA; Squamosa promoter-binding protein 2
Swissprot	Q38741	2e-44	SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBL	A0A067FH62	1e-65	A0A067FH62_CITSI; Uncharacterized protein
TrEMBL	A0A2H5QHN5	1e-65	A0A2H5QHN5_CITUN; Uncharacterized protein
TrEMBL	V4URD2	1e-65	V4URD2_9ROSI; Squamosa promoter-binding protein 1
STRING	XP_006464784.1	2e-66	(Citrus sinensis)
STRING	XP_006451806.1	2e-66	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM868	28	118

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	9e-42	squamosa promoter binding protein-like 4

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]