PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_32853_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NF-YA

Protein Properties

Length: 269aa MW: 30213.8 Da PI: 6.6437

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_32853_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	49.9	1.1e-15	184	220	1	38
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpy 38 d p++VN+KQy++Il+RRq+Rakle++++l k+rk Neem_32853_f_1 184 DGPIFVNPKQYHGILRRRQSRAKLEAQNRL-VKTRKVC 220 57****************************.9999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	6.9E-7	182	243	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	17.642	183	218	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	8.5E-12	186	218	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MPHKNFDQGS VHTKPYFAIS CPSWWTSNEQ QMPQSLSKSI SLKTVSPHKP FRDGKYLGLQ 60 LPDQESSSAQ SIGQSHNEMV AADGSNSQDQ CISSDSGQDE SCGKGVEGQM KPVFLISNSE 120 NVFSQPHADY NHSMVHTSYP CGDRYFGGLF SPYGPQTLIH PQIGSHVVGI APARVPLPLD 180 PAEDGPIFVN PKQYHGILRR RQSRAKLEAQ NRLVKTRKVC MVDWLSFEQL LVLPEYEVQI 240 SEVLENRNQF HILFEVNQRD TVENGSYMH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011045960.1	2e-95	PREDICTED: nuclear transcription factor Y subunit A-3-like
TrEMBL	B9HDV6	5e-92	B9HDV6_POPTR; Uncharacterized protein
STRING	POPTR_0006s14740.1	8e-93	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18096	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54160.1	1e-22	nuclear factor Y, subunit A5