PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3287_a_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 172aa    MW: 19987.4 Da    PI: 9.5166
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3287_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM68.61.7e-2141363128
            NAM   3 pGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                    +G+rF+Pt++elv+++L +k++ ++ l+ +++++ +d+y    Pwd+ +    ++  +++ ++fF++ +k ++ gkr nr+++s +W+     k+v
  Neem_3287_a_1   4 VGYRFRPTEKELVNYFLYNKITPNPvLNDDNAVRVCDLYGDgAPWDIWNvnggNYLLKDEALHFFTQLKKLTPIGKRYNRKIASXVWQXEDGAKAV 99 
                    7************************54555569999**98769****633444333488899****************************999*** PP

            NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +   +++    kk + + +g + + ++  W+m ey++
  Neem_3287_a_1 100 XAXggSKQILXFKKRFQYEDGYNTE-QNGGWIMYEYTI 136
                    9986556668999999999887777.899*******86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.9542160IPR003441NAC domain
PfamPF023657.6E-164136IPR003441NAC domain
SuperFamilySSF1019414.84E-224159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MPKVGYRFRP TEKELVNYFL YNKITPNPVL NDDNAVRVCD LYGDGAPWDI WNVNGGNYLL  60
KDEALHFFTQ LKKLTPIGKR YNRKIASXVW QXEDGAKAVX AXGGSKQILX FKKRFQYEDG  120
YNTEQNGGWI MYEYTINPSL LGEQYSHKAT DYVVCSMKKE RERTAKREGR FG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015380915.13e-57NAC domain-containing protein 53-like
RefseqXP_015382069.11e-57NAC domain-containing protein 53-like
TrEMBLA0A2H5QWR06e-52A0A2H5QWR0_CITUN; Uncharacterized protein
STRINGXP_006492969.11e-56(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1918526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.16e-11NAC-domain protein 101