PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_32902_a_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family ERF
Protein Properties Length: 200aa    MW: 22602.2 Da    PI: 6.6219
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_32902_a_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP229.22.3e-0943732654
             AP2 26 g..krkrfslgkfgtaeeAakaaiaarkkle 54
                    g   ++r++lg+f tae+Aa+a+++a++ + 
  Neem_32902_a_1 43 GvpGKTRIWLGTFETAEDAARAYDEAARLMC 73
                    444579*********************8775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.826882IPR001471AP2/ERF domain
SMARTSM003804.5E-153188IPR001471AP2/ERF domain
PfamPF008472.6E-54074IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-124584IPR016177DNA-binding domain
CDDcd000183.60E-194684No hitNo description
Gene3DG3DSA:3.30.730.102.2E-194682IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MFFSSRHFHK HISDFEIRPK RFDFVPPWLD LSKGIAASVN DTGVPGKTRI WLGTFETAED  60
AARAYDEAAR LMCGPKARTN FPYNPNEPQS SSSKLLSATL AAKLHKCQMA FLQGHKKNNP  120
KEQLQPHTQC TPLAGKSTET SAEWPETKWV GRETQVESXX XXXXXXXSQQ FKSLEDDHIE  180
QMIEELLDYG SIELCCGNST
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006427548.16e-81ethylene-responsive transcription factor ERF003
SwissprotQ94AW52e-45ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A067E3X81e-79A0A067E3X8_CITSI; Uncharacterized protein
STRINGXP_006427548.12e-80(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.11e-24ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]