PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_33046_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

EIL

Protein Properties

Length: 359aa MW: 41834.6 Da PI: 7.496

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_33046_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	313.9	4.4e-96	27	284	1	263
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 eelkkrmwkd+m++ +lke+++ e+ ++ ++++e++rrkkmsraQ +iLkY +k+me+cnaqGfvY i+pekgkpv g+sdsL +WW Neem_33046_f_2 27 EELKKRMWKDRMRMHKLKEKREI--EE-------SELSTREEASRRKKMSRAQTSILKYVVKIMEACNAQGFVYAIVPEKGKPVIGSSDSLHKWW 112 8************88887764..23.......3345689************************************************** PP XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT..--T CS EIN3 96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelg..lsk 188 ke+++fd +p+ai+ky+++ + + +q+++ss h l++l D tlgSL salmqh ppqrrfp e+g +pPWWPtGke wwge+g + + Neem_33046_f_2 113 KEQIRFDHYAPVAIAKYKPAFELHR--ELNQSSPSSFVHLLHQLEDNTLGSLVSALMQHWVPPQRRFPIERGSAPPWWPTGKERWWGEQGihMIE 205 *************87666654..3335689****************************************************76677 PP T--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHH....TTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX CS EIN3 189 dqgtppykkphdlkkawkvsvLtavikhmsptieeire....lerqskylqdkmsakesfallsvlnqeekecatvsah 263 ++g+ppyk +hdlkkawkvsvL+ ikh+s+ ++ +++ l+ +sk lq km+ake++++++v+nqee+++ Neem_33046_f_2 206 EHGPPPYKRSHDLKKAWKVSVLAGIIKHTSKGLMILKKlgrsLVSESKFLQYKMMAKEKDTWCKVVNQEEALLPAPEEA 284 888************************988775511126889**********************987544433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	8.9E-95	27	275	No hit	No description
Gene3D	G3DSA:1.10.3180.10	2.9E-51	143	278	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamily	SSF116768	1.07E-43	148	277	IPR023278	Ethylene insensitive 3-like protein, DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MVKIYEERDA VNRGEEEEDE DEEISYEELK KRMWKDRMRM HKLKEKREIE ESELSTREEA 60 SRRKKMSRAQ TSILKYVVKI MEACNAQGFV YAIVPEKGKP VIGSSDSLHK WWKEQIRFDH 120 YAPVAIAKYK PAFELHRELN QSSPSSFVHL LHQLEDNTLG SLVSALMQHW VPPQRRFPIE 180 RGSAPPWWPT GKERWWGEQG IHMIEEHGPP PYKRSHDLKK AWKVSVLAGI IKHTSKGLMI 240 LKKLGRSLVS ESKFLQYKMM AKEKDTWCKV VNQEEALLPA PEEAGKQEET PHFNKDKHVI 300 NMELAKADEK ITYNIDLIED SGDGSGSGSS VEDYANASYW VNGNNVDYIY SRHEWRIIK

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MVKIYEERDA VNRGEEEEDE DEEISYEELK KRMWKDRMRM HKLKEKREIE ESELSTREEA  60
SRRKKMSRAQ TSILKYVVKI MEACNAQGFV YAIVPEKGKP VIGSSDSLHK WWKEQIRFDH  120
YAPVAIAKYK PAFELHRELN QSSPSSFVHL LHQLEDNTLG SLVSALMQHW VPPQRRFPIE  180
RGSAPPWWPT GKERWWGEQG IHMIEEHGPP PYKRSHDLKK AWKVSVLAGI IKHTSKGLMI  240
LKKLGRSLVS ESKFLQYKMM AKEKDTWCKV VNQEEALLPA PEEAGKQEET PHFNKDKHVI  300
NMELAKADEK ITYNIDLIED SGDGSGSGSS VEDYANASYW VNGNNVDYIY SRHEWRIIK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4zds_A	7e-44	146	277	1	126	Protein ETHYLENE INSENSITIVE 3
4zds_B	7e-44	146	277	1	126	Protein ETHYLENE INSENSITIVE 3
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Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027337569.1	1e-119	putative ETHYLENE INSENSITIVE 3-like 4 protein
Swissprot	Q9FJQ5	1e-104	EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBL	A0A2P5RM40	1e-115	A0A2P5RM40_GOSBA; Uncharacterized protein
STRING	XP_007159632.1	1e-115	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5879	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65100.1	1e-93	EIL family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]