PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3319_f_4
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 258aa    MW: 28890.9 Da    PI: 9.8557
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3319_f_4genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.2e-1471117354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
            HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                    ++h+++E+rRRdriN  +++Lr+l+Pk+     +K++Ka+ L  A+ ++k+L
  Neem_3319_f_4  71 KSHSQAEKRRRDRINAQLATLRKLIPKS-----EKMDKAALLGSAIAHVKDL 117
                    68*************************8.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.22468117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-1370120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.98E-1071118No hitNo description
Gene3DG3DSA:4.10.280.104.4E-1571118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-1171117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-1274123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048734.95E-6165228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MENCFQHSGW PDSMNYWANS NFSPHNDSSF PVTWQLTPQV NSASSSSVHE FPPWSIPVSE  60
QAEDKATAVS KSHSQAEKRR RDRINAQLAT LRKLIPKSEK MDKAALLGSA IAHVKDLKLK  120
AMEVSKRFTI PTEVDEVTVD CDHPQAAASA TNVNKSKGNI FIKASICCED QPELYREIIR  180
VLKNLGLTTV KAEISSVGGR IKSMLVLYNK ESDDQESVSL SKRLKQSLHL VLNRMSSSTM  240
AANCRIRSKR QRLFFPSQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022744366.11e-110transcription factor bHLH51-like
TrEMBLA0A061FT341e-107A0A061FT34_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRINGEOY177291e-108(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM68062542
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.17e-53bHLH family protein