PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_33243_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 259aa MW: 28986.9 Da PI: 9.9927

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_33243_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.1	1e-10	154	201	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++ L++l+P + +k + Ka+iL + ++Y++ Lq Neem_33243_f_1 154 SHSLAERVRRAKISVRMTLLQSLVPGC----DKIVGKAQILDEIIKYVRTLQ 201 8***********************9....899**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.02E-8	148	205	No hit	No description
SuperFamily	SSF47459	3.79E-14	148	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.5E-15	150	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.494	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-8	154	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-8	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MAAFSYQHPT FVFDSFLVPD TSNNMSSLPQ EATIIRARSC FSPMLPSTAN KCFQDIPLLA 60 QIHETTSPLH KFNSSIGKQD PNSSPAVAQI SSGDHMVSST EKKRKNVDVK VGRENRGEKE 120 RKNKRCAKKQ KKVAEEAPND YVHVRARRGQ ATDSHSLAER VRRAKISVRM TLLQSLVPGC 180 DKIVGKAQIL DEIIKYVRTL QTQVESLDFH QLPPVLDSSS TQLTSFPDEK TPNPNSILLH 240 QEQNSKCNAT ISREFKLSN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015387149.2	2e-65	transcription factor bHLH137-like
TrEMBL	V4TFH5	3e-64	V4TFH5_9ROSI; Uncharacterized protein
STRING	XP_006438852.1	4e-65	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22754	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	2e-36	bHLH family protein