PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_33729_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

C2H2

Protein Properties

Length: 153aa MW: 16967.6 Da PI: 8.2728

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_33729_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.7e-05	43	65	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Neem_33729_f_1 43 FSCNYCQRKFYSSQALGGHQNAH 65 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.5E-6	40	70	No hit	No description
PROSITE profile	PS50157	11.094	43	70	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	65	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MDFQPNTSLH LSLPNNQINL ELVLEPSSSS SSSPNSPAEP RTFSCNYCQR KFYSSQALGG 60 HQNAHKLERT LAKKSREFSS AVRAHGGSNP RSGSSHGLHF NSTLGGFEHQ GHPGRFAGEL 120 SYGGREMNYS SMSYRPENVH QEEFNQLDLS LRL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of floral organ abscission. Participates in processes that directly or indirectly influence shedding of floral organs. {ECO:0000269\|PubMed:18192438}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024458332.1	3e-66	zinc finger protein 2
Swissprot	Q39261	5e-33	ZFP2_ARATH; Zinc finger protein 2
TrEMBL	A0A3N7FA95	6e-65	A0A3N7FA95_POPTR; Uncharacterized protein
STRING	Gorai.004G100800.1	1e-64	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6621	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57520.1	1e-33	zinc finger protein 2