PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33765_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 116aa    MW: 13765.6 Da    PI: 7.4954
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33765_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM36.51.4e-11128951128
             NAM  51 vkaeekewyfFskrdkkyat.gkrknratk.sgyWkatgk.dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +++++++ yf ++ +kky++ ++  nr+t   g Wk t k   ++  ++++ +   +++v+y+     ++kt+W+m+ey+l
  Neem_33765_f_1  12 IDSGNEKKYFLTHLEKKYPNnEEVINRQTPsGGSWKITAKyLINIEGEDEKSILKETSFVYYR---VFTQKTQWFMKEYTL 89 
                     56778899***********835567997763778**9999345666657777888889****5...44568********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.4721106IPR003441NAC domain
SuperFamilySSF1019418.24E-1114106IPR003441NAC domain
PfamPF023651.3E-51989IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MHVMKWNADL AIDSGNEKKY FLTHLEKKYP NNEEVINRQT PSGGSWKITA KYLINIEGED  60
EKSILKETSF VYYRVFTQKT QWFMKEYTLS NQNELPQWAL CVVYYKPGRK SDVNDD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.38e-08NAC family protein