PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3377_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WRKY

Protein Properties

Length: 193aa MW: 21775.8 Da PI: 9.3544

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3377_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.7	2e-32	114	172	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Neem_3377_f_3 114 LDDGYRWRKYGQKAVKNSIYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGVHNHP 172 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.3E-33	100	172	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-28	107	173	IPR003657	WRKY domain
PROSITE profile	PS50811	29.011	109	174	IPR003657	WRKY domain
SMART	SM00774	1.1E-37	114	173	IPR003657	WRKY domain
Pfam	PF03106	9.9E-26	115	172	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MDQGQEQPPL PSPTPPLLPP LNPPYVFTPS LPSSSLHPPL EPQILPDIDW VSLLSGQPGL 60 GENGPVLEST SVIADNGGEE DKGIKENNKR KGSRIKRATR PRFAFQTRSA DDILDDGYRW 120 RKYGQKAVKN SIYPRSYYRC THHTCNVKKQ VQRLSKDTSI VVTTYEGVHN HPCEKLMETL 180 TPLLKQMQFL ARF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-24	104	171	7	74	Probable WRKY transcription factor 4
2lex_A	3e-24	104	171	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00317	DAP	Transfer from AT2G46130	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022759566.1	1e-105	probable WRKY transcription factor 43 isoform X1
Swissprot	Q8GY11	2e-56	WRK43_ARATH; Probable WRKY transcription factor 43
TrEMBL	A0A1Q3B7K9	1e-96	A0A1Q3B7K9_CEPFO; WRKY domain-containing protein
TrEMBL	G3FF75	1e-96	G3FF75_9ROSI; WRKY transcription factor 23-1 (Fragment)
STRING	XP_006491470.1	2e-95	(Citrus sinensis)
STRING	XP_006444939.1	2e-95	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM509	28	154

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46130.1	1e-58	WRKY DNA-binding protein 43

Publications ? help Back to Top
Geilen K,Heilmann M,Hillmer S,Böhmer M WRKY43 regulates polyunsaturated fatty acid content and seed germination under unfavourable growth conditions. Sci Rep, 2017. 7(1): p. 14235 [PMID:29079824]