PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3378_f_11

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 312aa MW: 34879.3 Da PI: 7.7194

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3378_f_11	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.5	7.6e-11	74	166	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...........................................TTS-.STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas........................................kapskK.lsKaeiLekAveYIksL 54 ++h e+Er+RR+riN +++Lr+l+P a +++ ++Ka+ L+++v+++k+L Neem_3378_f_11 74 KNHIEAERKRRKRINGHLDTLRSLIPGAKklfslnwegtgeasaqlhnevnanccrcicvqqmhyvdvhMCYCEIwMDKATLLTEVVRHLKEL 166 78*************************888999999999999999999999999999999999999999889999999999999999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	4.52E-10	64	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.22	71	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.27E-7	74	103	No hit	No description
Pfam	PF00010	9.7E-9	74	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-11	75	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0019	77	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-11	143	191	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.52E-10	148	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:3.30.70.260	1.1E-4	200	246	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDPYARSYSR NDENGVERGS GEFVVSNGFQ ARPRNGSSSH SSLVLDSERG ELVEANVKLQ 60 RKGASVERSV AASKNHIEAE RKRRKRINGH LDTLRSLIPG AKKLFSLNWE GTGEASAQLH 120 NEVNANCCRC ICVQQMHYVD VHMCYCEIWM DKATLLTEVV RHLKELEANA SEANENFFMP 180 SDIDEVKVEQ QEDGSDGAPH FRASLCCNYK PGLLSDLRKA LDALHLIIVK AEIATLEGRM 240 KNVFVMASCN EQKFGNTEVC QSLVSSVHQA FRSVLNKFSA TEEFLLGARL SNKRRRVSLF 300 DSSLSSSSGY QR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	292	296	KRRRV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024047431.1	1e-129	putative transcription factor bHLH107 isoform X1
Refseq	XP_024047432.1	1e-129	transcription factor bHLH30 isoform X2
TrEMBL	V4U285	1e-127	V4U285_9ROSI; Uncharacterized protein
STRING	XP_006446772.1	1e-128	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18594	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	3e-20	bHLH family protein