PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_33828_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 247aa MW: 28357 Da PI: 9.0964

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_33828_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	89.2	4.4e-28	42	121	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+++e+laL+++r+em+++++++ lk+plW+evs+k++e g++rs+k+Ckek+en+ k+++++k+g++++ ++++fdql+ Neem_33828_f_1 42 RWPREETLALLKIRSEMDTAFKDSGLKAPLWDEVSRKLSELGYNRSAKKCKEKFENIYKYHRRTKQGRSGK------SYRFFDQLQ 121 8****************************************************************9984......599**98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	7.608	35	99	IPR017877	Myb-like domain
SMART	SM00717	1.9E-4	39	101	IPR001005	SANT/Myb domain
CDD	cd12203	3.73E-24	41	106	No hit	No description
Pfam	PF13837	9.0E-20	41	123	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MESSTLPENP GPVTGNQENG GAEEEEERVK GAEGERNFGG NRWPREETLA LLKIRSEMDT 60 AFKDSGLKAP LWDEVSRKLS ELGYNRSAKK CKEKFENIYK YHRRTKQGRS GKSYRFFDQL 120 QALDNNHSFV PFSSPERINL STAMEINPIS EIKNDVQCPI PNPSSSFMDI STSTTSTSSK 180 ETGGSQKKKR KLTGFFERLM KEVMEKQEKL QKKFIEAIEK CEQERVAREE AWKMQELARI 240 TQVFRAI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	191	KKKRKL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that binds specific DNA sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006427884.1	1e-127	trihelix transcription factor GT-2
Refseq	XP_006464545.1	1e-127	trihelix transcription factor GT-2-like isoform X1
Swissprot	Q39117	3e-56	TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBL	A0A067ER21	1e-128	A0A067ER21_CITSI; Uncharacterized protein
STRING	XP_006464545.1	1e-127	(Citrus sinensis)
STRING	XP_006427884.1	1e-127	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5995	28	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	4e-43	Trihelix family protein