PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_33981_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family C2H2
Protein Properties Length: 411aa    MW: 45976.5 Da    PI: 8.2868
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_33981_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.33.5e-07238260123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C+ Cgk F+r  nL+ H+r H
  Neem_33981_f_1 238 HYCQVCGKGFKRDANLRMHMRAH 260
                     68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.27E-6236263No hitNo description
PROSITE profilePS5015712.653238265IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.1E-6238264IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0034238260IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SMARTSM0035590295328IPR015880Zinc finger, C2H2-like
SMARTSM0035522333355IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MINSGATSCF PNVSQGLKVY SMPEDVVSSS LQQQSNSGPE TYSNSLLYGV SMLKEKVHQV  60
QSLVAILICP DHNQPPESTT IAIANVGSLV QDIILTASSL MVTCQQMTTT LVSTSASADN  120
NTSEVLHQQQ HQQQHVKVSD HSGLSQPNNF DGNNRVSSNN IGQEIRGQSF YFSENFDWYG  180
DNYDNCNANR DDDNRGMHTS NNNNQVETEI NIEGVSISST NDDIIQLDAK DLLAKYTHYC  240
QVCGKGFKRD ANLRMHMRAH GDEYKTSAAL TNPFKNNKGN SMGTGDSTVK ITRKYSCPHE  300
GCRWNRKHAK FQPLKSMICV KNHYKRSHCP KMYVCKRCNR KQFSVLSDLR THEKHCGDLK  360
WQCSCGTTFS RKDKLMGHVA LFVGHTPAIN IPTKPAKVVE KQVTQTQLDE R
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP1, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:23935008}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00522DAPTransfer from AT5G22890Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028052411.11e-175protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
RefseqXP_028101965.11e-175protein SENSITIVE TO PROTON RHIZOTOXICITY 2-like
SwissprotQ0WT241e-110STOP2_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A061GZV21e-168A0A061GZV2_THECC; C2H2 and C2HC zinc fingers superfamily protein, putative
STRINGEOY336791e-169(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57522547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-111C2H2 family protein