PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3403_f_3

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 347aa MW: 37594.3 Da PI: 10.282

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3403_f_3	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	49.1	1.2e-15	269	320	5	56
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+k+ e+ ++ Neem_3403_f_3 269 RRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRKKQAEMMEMQ 320 79****************************************9988877765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.5E-14	265	331	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.461	267	318	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.70E-27	269	323	No hit	No description
SuperFamily	SSF57959	3.81E-11	269	319	No hit	No description
Gene3D	G3DSA:1.20.5.170	5.8E-15	269	319	No hit	No description
Pfam	PF00170	2.1E-13	269	321	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	272	287	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009651	Biological Process	response to salt stress
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0010255	Biological Process	glucose mediated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MGSNINFKNF SNEPPNDGSK PPGNIPLARQ PSIYSLTFDE FQNTVGGVET QSMLASSSSN 60 PDGTNGLQRQ GSLTLPRTLS HKTVDEVWKD ISKEYSLKDG SGGGQGQKNN MPQRQQTLGE 120 MTLEEFLVRA GVVREDIQLG GVAKVNNNIG FFGDFARSSN NPGYGIGFQH MGKGASLMGN 180 RNLESGMGDQ AMSSSLIQGG ALQGGGMGMV GLGAGPVGVT TGSPANQLSS DGIGKSNGDT 240 SSVSPVPYMF NGGLRGRKFN GNVEKVVERR QRRMIKNRES AARSRARKQA YTMELEAEVA 300 KLKEENQELR KKQAEMMEMQ KNQVLEMMNM QQGSKKRCLR RTQTGPW

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MGSNINFKNF SNEPPNDGSK PPGNIPLARQ PSIYSLTFDE FQNTVGGVET QSMLASSSSN  60
PDGTNGLQRQ GSLTLPRTLS HKTVDEVWKD ISKEYSLKDG SGGGQGQKNN MPQRQQTLGE  120
MTLEEFLVRA GVVREDIQLG GVAKVNNNIG FFGDFARSSN NPGYGIGFQH MGKGASLMGN  180
RNLESGMGDQ AMSSSLIQGG ALQGGGMGMV GLGAGPVGVT TGSPANQLSS DGIGKSNGDT  240
SSVSPVPYMF NGGLRGRKFN GNVEKVVERR QRRMIKNRES AARSRARKQA YTMELEAEVA  300
KLKEENQELR KKQAEMMEMQ KNQVLEMMNM QQGSKKRCLR RTQTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00186	DAP	Transfer from AT1G45249	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016687754.1	1e-136	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	2e-96	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A1U8JHG4	1e-134	A0A1U8JHG4_GOSHI; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A2P5QX52	1e-135	A0A2P5QX52_GOSBA; Uncharacterized protein
STRING	Gorai.009G212600.1	1e-134	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	8e-80	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]