PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_34120_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 235aa    MW: 26297.3 Da    PI: 8.2789
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_34120_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.86.9e-26481752128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevl 93 
                     ++G+rF+P+de l ++yL  k +g++  ++++ ik+vd+y+++P+dL   +++ ++ ++yfF++ +kky+    +    + g Wk+t +   +v+
  Neem_34120_f_1  48 AVGVRFNPKDEVLASHYLFGKESGSSgGPIFSLIKDVDVYQHDPSDLSrLAYDFGKGKMYFFTPLNKKYKV---P--GPSGGCWKKTREqPSSVK 137
                     68*****************99998887788899**************944555677799*********963...2..24589****998356777 PP

             NAM  94 skkgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                      k+g+ v +k tLv+y   ++++++++kt+W+m+ey l
  Neem_34120_f_1 138 GKDGNPVATKSTLVYYkndQKQNSNAVKTQWLMKEYML 175
                     78999***********55445777888*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.23E-2844197IPR003441NAC domain
PROSITE profilePS5100530.45347197IPR003441NAC domain
PfamPF023651.8E-1549174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MAAPATMASS SSSKYANEGK AYNLSKISNS LIADDSIKWE QKWEQKVAVG VRFNPKDEVL  60
ASHYLFGKES GSSGGPIFSL IKDVDVYQHD PSDLSRLAYD FGKGKMYFFT PLNKKYKVPG  120
PSGGCWKKTR EQPSSVKGKD GNPVATKSTL VYYKNDQKQN SNAVKTQWLM KEYMLLDNQL  180
SKRNARHSWT LCVVYNSKRH GDCSQKMSDD EDNEFISSDS CEDSASDMSQ SDSDQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-174419812169Stress-induced transcription factor NAC1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1852528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.13e-20NAC domain containing protein 32