PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3422_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 117aa    MW: 13151.4 Da    PI: 4.2649
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3422_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.1e-103263132
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                     +g+WTteEd +l++ ++ +G ++Wk++a +  
    Neem_3422_f_2 32 KGAWTTEEDRKLAEFIAIHGAKRWKAVAVKAE 63
                     79*************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-92661IPR009057Homeodomain-like
SuperFamilySSF466892.51E-72761IPR009057Homeodomain-like
PROSITE profilePS500907.2712770IPR017877Myb-like domain
PfamPF002491.3E-83263IPR001005SANT/Myb domain
CDDcd001679.74E-63459No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    Send to blast
MAAVSKESIK TEEEQVETKR DLTSTSKTEV NKGAWTTEED RKLAEFIAIH GAKRWKAVAV  60
KAETAKEENS SASNSGGEES NNIIGFNVDE FFDFSDEDPM NLEWIGRFLE PDESFKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024958001.11e-14transcription factor WER-like
TrEMBLA0A1R3H7915e-32A0A1R3H791_9ROSI; Uncharacterized protein
STRINGXP_002535033.17e-19(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27785.11e-07myb domain protein 118