PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_34330_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family NAC
Protein Properties Length: 148aa    MW: 17320.7 Da    PI: 10.0854
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_34330_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM80.73.1e-25191402128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgk.........rknratksgyWkatg 87 
                      pG+rF+Pt ee++ +yL+kk  + ++ + ++i+e+diy++ePwdL     ++++e+y Fs+ ++k ++gk           +r+t++g Wk  g
  Neem_34330_f_2  19 LPGYRFSPTGEEII-DYLEKKRLDPDNFCVDMIQELDIYSYEPWDLA----GTKSEVYIFSEPRSKGENGKprpkgkngkLFHRKTTKGCWKING 108
                     59************.99*99988888777799**************7....34679******9999986554333333326667799******** PP

             NAM  88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     k  +v +     +g k+tL f +g++    +t+W mhe+ +
  Neem_34330_f_2 109 KGSKVNR-----IGRKRTLSFRRGQS----NTEWAMHEFYI 140
                     ***9988.....9********95543....68******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-2617145IPR003441NAC domain
PROSITE profilePS5100523.8118148IPR003441NAC domain
PfamPF023656.7E-1720139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDSFRSITAP REVALRKSLP GYRFSPTGEE IIDYLEKKRL DPDNFCVDMI QELDIYSYEP  60
WDLAGTKSEV YIFSEPRSKG ENGKPRPKGK NGKLFHRKTT KGCWKINGKG SKVNRIGRKR  120
TLSFRRGQSN TEWAMHEFYI TEEDSRYK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-122014622151NAC domain-containing protein 19
3swm_B3e-122014622151NAC domain-containing protein 19
3swm_C3e-122014622151NAC domain-containing protein 19
3swm_D3e-122014622151NAC domain-containing protein 19
3swp_A3e-122014622151NAC domain-containing protein 19
3swp_B3e-122014622151NAC domain-containing protein 19
3swp_C3e-122014622151NAC domain-containing protein 19
3swp_D3e-122014622151NAC domain-containing protein 19
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.15e-19NAC domain containing protein 52