PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_34335_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 290aa MW: 32571.3 Da PI: 5.9589

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_34335_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	271.5	2.7e-83	3	289	80	374
GRAS 80 alklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelg 173 a+k+fsevsP+++f ++t+Nqa+lea++ ++r+Hi+Dfdi+ G+QW++++q+L R+ +g+psl+iT+++sp+++++ el ++e+L++fA+e+g Neem_34335_f_1 3 AYKVFSEVSPLIQFLNFTCNQALLEALDDADRIHIVDFDIGFGAQWASFMQELPMRSnRGTPSLKITAFASPSTHHHVELGLMRENLTQFANEIG 97 89****************************************************9899******************************* PP GRAS 174 vpfefnvlvakrledl..eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 v+fe +vl ++l++ l Lr +++EalaVn+ + + +++ +l+s +L++v++lsPk+vv +++ +d+++ +F e++l+al+ y Neem_34335_f_1 98 VSFELDVLNFDSLDQTsyALPILRSSENEALAVNFPI--WTSANQPSALPS----LLRFVRQLSPKIVVSSDRGCDRSDLPFPEHILHALQSYIN 186 ****9998888722456799999****99..555556666666....************************************ PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlg 361 l++sl+a + ++ +k+Er+ll+++i++ v ++ ++ W+ + +aGF+p+++s+++++qa++++++++++g++ve++++slvl+ Neem_34335_f_1 187 LLESLDAV-NVTPDALNKIERFLLQPRIESTVLGGLRA----PDRMPLWKTLFASAGFSPITFSNFTETQAECVVKRTPVRGFQVEKRQASLVLC 276 *665.45779999************99998....89999******************************************** PP GRAS 362 WkdrpLvsvSaWr 374 W++r+L+s+SaWr Neem_34335_f_1 277 WQRRELISASAWR 289 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	39.398	1	269	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.4E-81	3	289	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MGAYKVFSEV SPLIQFLNFT CNQALLEALD DADRIHIVDF DIGFGAQWAS FMQELPMRSN 60 RGTPSLKITA FASPSTHHHV ELGLMRENLT QFANEIGVSF ELDVLNFDSL DQTSYALPIL 120 RSSENEALAV NFPIWTSANQ PSALPSLLRF VRQLSPKIVV SSDRGCDRSD LPFPEHILHA 180 LQSYINLLES LDAVNVTPDA LNKIERFLLQ PRIESTVLGG LRAPDRMPLW KTLFASAGFS 240 PITFSNFTET QAECVVKRTP VRGFQVEKRQ ASLVLCWQRR ELISASAWRC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-30	4	289	80	375	GRAS family transcription factor containing protein, expressed
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006477215.1	0.0	scarecrow-like protein 27
Swissprot	O81316	1e-109	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2H5NTR4	0.0	A0A2H5NTR4_CITUN; Uncharacterized protein
STRING	XP_006477215.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8574	27	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-111	GRAS family protein

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]