PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_34511_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 207aa    MW: 24393 Da    PI: 10.0253
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_34511_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS275.3e-09242135173
            GRAS 135 RpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                     Rp+gpp+lRiTg++ p++g   +e++eetg+rLa++A+ ++
  Neem_34511_f_1   2 RPGGPPKLRITGIEFPQPGfrPAERVEETGRRLADYAKDFN 42 
                     9*****************9******************9876 PP
2GRAS144.51e-4443205212374
            GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerr 306
                     +llde+v+++s r+ + +l+++++P+ +++   +  ++++ F++rf eal ++sa+fd+le+ +pre++er+ +E+e++gre+ nv+aceg er+
  Neem_34511_f_1  43 NLLDETVAVDSSRNIFFNLIRRINPDAFIHGITNGAYGAPFFVTRFREALFHFSAMFDMLETIVPREDRERMLIEKEIFGREALNVIACEGWERV 137
                     7899******************************************************************************************* PP

            GRAS 307 erhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     er et+++W+ r  +aGF + p++ +++k a   +r  + + + ++e++ +l++gWk+r ++++S+W+
  Neem_34511_f_1 138 ERPETYKQWQVRNLRAGFIQRPFDRDIVKRAMNRVRSSYHKDFVIDEDNRWLLQGWKGRIIFALSVWK 205
                     ***************************************888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.1711185IPR005202Transcription factor GRAS
PfamPF035141.8E-6242IPR005202Transcription factor GRAS
PfamPF035143.6E-4243205IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MRPGGPPKLR ITGIEFPQPG FRPAERVEET GRRLADYAKD FNNLLDETVA VDSSRNIFFN  60
LIRRINPDAF IHGITNGAYG APFFVTRFRE ALFHFSAMFD MLETIVPRED RERMLIEKEI  120
FGREALNVIA CEGWERVERP ETYKQWQVRN LRAGFIQRPF DRDIVKRAMN RVRSSYHKDF  180
VIDEDNRWLL QGWKGRIIFA LSVWKPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-114205137375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429105.11e-128scarecrow-like protein 9
RefseqXP_006480839.11e-128scarecrow-like protein 9
SwissprotO809331e-101SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A067EBD11e-127A0A067EBD1_CITSI; Uncharacterized protein
STRINGXP_006480839.11e-127(Citrus sinensis)
STRINGXP_006429104.11e-127(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15599616
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.11e-103GRAS family protein