PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_34678_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 321aa    MW: 36215.4 Da    PI: 8.8105
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_34678_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12109160155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i+  A++++k+L+
  Neem_34678_f_1 109 QRMTHIAVERNRRKLMNEHLAVLRSLMPES---YVQRGDQASIVGGAIQFLKELE 160
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.1E-12107164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.91E-11107164No hitNo description
SuperFamilySSF474591.83E-15107175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.634108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.6E-10109160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-9114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MTIEALSSNE FLNFIIYDTI SATPLSSQEN LETPSFPVET NDSNKGNNAM RLPQDEVRAL  60
NSSSLLSLGR GRVRQLEAVD WKQNLAAQGR RKRRRKPRFC KNKEEAETQR MTHIAVERNR  120
RKLMNEHLAV LRSLMPESYV QRGDQASIVG GAIQFLKELE HLLQTLETQK LQLLQNGVIR  180
ENNEEGNSSE ILPPPFAQLF VYPQYTRSQF PNNKFTSKTK AVVADIEVTL IETHANLRIL  240
SRRSPRQLSK LVAGFESLLL SILHLNVTKM DQMVLYSISA KVEEGCQLIT VDDIAGAVHH  300
MLRIIEEAAA NVDGIGVRSC P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18995RRKRRRK
29094RKRRR
3109120RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022731905.11e-145transcription factor bHLH71-like isoform X2
RefseqXP_022732027.11e-145transcription factor bHLH71-like isoform X1
SwissprotQ56XR05e-72BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A2C9UHA01e-140A0A2C9UHA0_MANES; Uncharacterized protein
STRINGcassava4.1_012613m1e-141(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM103892535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46690.16e-64beta HLH protein 71
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]