PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_34837_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bZIP

Protein Properties

Length: 214aa MW: 24621.8 Da PI: 8.4391

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_34837_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.1	3e-11	53	91	5	40
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee...kvkeLea 40 k err+++NReAAr+sR+RKka++++Le k ++Le+ Neem_34837_f_1 53 KTERRLAQNREAARKSRLRKKAYVQQLESsrlKLAQLEQ 91 89**************************83333444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.5E-4	48	116	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	3.7E-8	49	95	No hit	No description
PROSITE profile	PS50217	9.427	51	95	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.45E-7	52	96	No hit	No description
Pfam	PF00170	3.8E-8	53	91	IPR004827	Basic-leucine zipper domain
CDD	cd14708	2.63E-22	53	104	No hit	No description
PROSITE pattern	PS00036	0	56	71	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	6.1E-29	139	212	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MSSTSTELAA LRRMSIFEPY PPISMWGDAF QGDASPNTDS STIVQVDARL DNKTERRLAQ 60 NREAARKSRL RKKAYVQQLE SSRLKLAQLE QELERTRHQG LYIGIASDGS HYGLSAHINP 120 GITAFEMEYG HWVEEQNRQI CELRNALQAH ITDIELRILV ESGLNHYYNL FRMKADAAKA 180 DVFYLISGMW RTSTERFFQW IGGFRPSELL NVKH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1 (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12953119}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434079.1	1e-127	transcription factor TGA7 isoform X2
Swissprot	Q93ZE2	3e-95	TGA7_ARATH; Transcription factor TGA7
TrEMBL	V4V5P2	1e-125	V4V5P2_9ROSI; Uncharacterized protein
STRING	XP_006434079.1	1e-126	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2976	27	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77920.1	1e-97	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]