PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_34838_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 309aa MW: 34244 Da PI: 8.5936

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_34838_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.8	0.00045	197	235	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR ri ++ LrellP++ + a++ ++YIk Lq Neem_34838_f_2 197 RRLRIAERVRALRELLPHS-----VEGNQAAVMDDIIDYIKFLQ 235 999*************9.....6899************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	8.708	185	234	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-7	196	245	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.46E-4	197	239	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.4E-7	198	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MLETITSPIG GTKSVYGGSE IQTELLFNNL GSPCGGTKSV YGGSEIQTEL LFNNLGSPCG 60 YIPADPSLDM DVSKVRFQNP YNEVTSANNY MSFQPQILPQ SSAKILQQNH TSGRQELHEE 120 NRNVSQLYPR VKVSPSFFLS KQHSGGSRQK SGASDRVSIT PFLTIAHSSG ITLKLNSKSL 180 ALAYFSSPEV LFLIQYRRLR IAERVRALRE LLPHSVEGNQ AAVMDDIIDY IKFLQLQVKE 240 LSRSRLGGQR ASVPFVFLEG YGHYVFNGQT TNEPLEEMLG KLLKMNPSAA SELLERRGLY 300 IMPMSLTEG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006480103.1	1e-109	uncharacterized protein LOC102621977
Refseq	XP_024043332.1	1e-109	uncharacterized protein LOC18049794
TrEMBL	A0A2H5NLD1	1e-106	A0A2H5NLD1_CITUN; Uncharacterized protein
STRING	XP_006480103.1	1e-108	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12956	16	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30980.1	9e-21	LJRHL1-like 2