PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_34841_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 208aa MW: 24003 Da PI: 4.5686

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_34841_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	109.2	4.7e-34	10	129	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevls 94 lppGfrF Ptdeelv ++L +k++ +++ ++i+++d++ + Pw+L+ k+ + ++wyfFs+ + r t++gyWk+ + ++++++ Neem_34841_f_1 10 LPPGFRFLPTDEELVLHFLYRKASLLPCNP-NIIPDLDLNFHAPWQLNGKALCSGNKWYFFSQISG--------DRETENGYWKQMENiEEPIFT 95 79***********************999.89**********976667899**9754........68899*87765999* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 + g+++g+kk Lvfy g+ap g++t+W+m+ey+l Neem_34841_f_1 96 TAGKKIGVKKYLVFYIGEAPVGVETNWIMQEYHL 129 ********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.12E-41	7	160	IPR003441	NAC domain
PROSITE profile	PS51005	39.366	10	161	IPR003441	NAC domain
Pfam	PF02365	1.6E-22	11	129	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MCDINATINL PPGFRFLPTD EELVLHFLYR KASLLPCNPN IIPDLDLNFH APWQLNGKAL 60 CSGNKWYFFS QISGDRETEN GYWKQMENIE EPIFTTAGKK IGVKKYLVFY IGEAPVGVET 120 NWIMQEYHLC NYGFSAKSHK RKGNRKVLES CKWVLCRVYE REGYSQSFCN YGNHVEDDDD 180 EDNGTELSCL DEMYLSLDDD LADISLPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-36	2	166	9	170	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-36	2	166	9	170	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-36	2	166	9	170	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-36	2	166	9	170	NO APICAL MERISTEM PROTEIN
3swm_A	1e-35	2	166	12	173	NAC domain-containing protein 19
3swm_B	1e-35	2	166	12	173	NAC domain-containing protein 19
3swm_C	1e-35	2	166	12	173	NAC domain-containing protein 19
3swm_D	1e-35	2	166	12	173	NAC domain-containing protein 19
3swp_A	1e-35	2	166	12	173	NAC domain-containing protein 19
3swp_B	1e-35	2	166	12	173	NAC domain-containing protein 19
3swp_C	1e-35	2	166	12	173	NAC domain-containing protein 19
3swp_D	1e-35	2	166	12	173	NAC domain-containing protein 19
4dul_A	9e-36	2	166	9	170	NAC domain-containing protein 19
4dul_B	9e-36	2	166	9	170	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006465058.1	6e-98	NAC domain-containing protein 104-like isoform X3
Swissprot	Q8GWK6	1e-61	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	V4SCU4	1e-96	V4SCU4_9ROSI; Uncharacterized protein
STRING	XP_006432173.1	2e-97	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	5e-59	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]