PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_34870_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 427aa MW: 46556.7 Da PI: 6.7932

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_34870_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	6e-05	309	347	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Neem_34870_f_1 309 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 347 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.706	297	346	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-10	307	363	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.01E-5	307	351	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.6E-8	311	351	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence Send to blast
MESANIHHEH QLRDQLVGSS SSLPTPSACH GVASSTHTWT PTPNVTLQKN EILFPPVNSA 60 MIQEPGIHWN SNAAESLTSQ TAHDIHLAKI KEEFADSFPK YTEMLNSPSS IEDSHLTTTR 120 SSKNEQKDLN DLSEKLLLKT ISSGFPINGY QFSAGDFYSN PHNNISSFGS AMPSRRNFSQ 180 IYPSINISNL NQSASATSSS FDMNLQALDL LASARFSGNF SQSSHDNLGM FEESLPFGFE 240 IQQSSRRPSC SPSNKISSSS SSPFNNSETT AEAKRPSGNL RQPTATQSQS AAKKSRSESR 300 ASCPPFKVRK EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQNQV ELIDFWMQTL 360 SVPYMKSAHN KSSRTIQGGS MEETDEEPKQ DLRSRGLCLV PLSCMTYVTN DAGAGGIWPP 420 PAFGGGT

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence Send to blast

MESANIHHEH QLRDQLVGSS SSLPTPSACH GVASSTHTWT PTPNVTLQKN EILFPPVNSA  60
MIQEPGIHWN SNAAESLTSQ TAHDIHLAKI KEEFADSFPK YTEMLNSPSS IEDSHLTTTR  120
SSKNEQKDLN DLSEKLLLKT ISSGFPINGY QFSAGDFYSN PHNNISSFGS AMPSRRNFSQ  180
IYPSINISNL NQSASATSSS FDMNLQALDL LASARFSGNF SQSSHDNLGM FEESLPFGFE  240
IQQSSRRPSC SPSNKISSSS SSPFNNSETT AEAKRPSGNL RQPTATQSQS AAKKSRSESR  300
ASCPPFKVRK EKLGDRIAAL QQLVAPFGKT DTASVLMEAI GYIKFLQNQV ELIDFWMQTL  360
SVPYMKSAHN KSSRTIQGGS MEETDEEPKQ DLRSRGLCLV PLSCMTYVTN DAGAGGIWPP  420
PAFGGGT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006473548.1	1e-174	transcription factor bHLH110
Swissprot	Q9SFZ3	4e-78	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A438K1J3	1e-167	A0A438K1J3_VITVI; Transcription factor bHLH110
STRING	XP_006473548.1	1e-173	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9351	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	1e-66	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]