PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_35361_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 204aa MW: 22882.6 Da PI: 9.6001

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35361_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	28.2	2.3e-09	83	202	250	373
GRAS 250 sesFlerflealeyysalfdsleaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrk 343 s++F f l a+f+s+++++p + e+r+ +E +++++++++ +++e ++l+e G+k+ +ls ++ +ak l+r+ Neem_35361_f_1 83 SGDFGSFFEGRLIQLQAFFESVQKNFPCHLkEARTAIECLFMAPQVSSLAGFKKREG------TTIEGRALSEIGLKAWRLSPDTILEAKELVRE 171 5566666677788899********98876999*********9988888872......2233589********************* PP GRAS 344 vksdg.yrveeesgslvlgWkdrpLvsvSaW 373 +s r e++++++lg ++ +Lv vS+W Neem_35361_f_1 172 GESPFwVRTRENENQMILGYMGTALVEVSSW 202 9955215555999**************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	8.0E-7	83	202	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MDMGSLVSEM KKTKKRGGRN EWLVFNCKAG LPHMGRVRNI RHVIEFLKVA TVSVNYPTKE 60 FSGTCKGIIT VGNVSGVQKL MDSGDFGSFF EGRLIQLQAF FESVQKNFPC HLKEARTAIE 120 CLFMAPQVSS LAGFKKREGT TIEGRALSEI GLKAWRLSPD TILEAKELVR EGESPFWVRT 180 RENENQMILG YMGTALVEVS SWIL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002313234.3	1e-56	nodulation-signaling pathway 2 protein
Refseq	XP_011005102.1	6e-57	PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBL	A0A3N7GYN9	4e-56	A0A3N7GYN9_POPTR; Uncharacterized protein
STRING	POPTR_0009s07930.1	4e-56	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM19272	5	7