PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_35390_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 162aa MW: 19025.4 Da PI: 8.8398

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35390_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	140.8	8.1e-44	6	138	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 ppGfrF Pt+eelv++yL++k++g++ ++++i+ v+iy+++PwdLp+ ++ + ++w+fF++r++++a+g r+nr t++gyWkatg+ Neem_35390_f_1 6 PPGFRFYPTEEELVSFYLHNKLQGRRedlnRLMDRIIPIVNIYNYNPWDLPQfseyLCHRDPEQWFFFIPRHENEARGGRPNRLTTAGYWKATGS 100 9***********************6653223347999*******9646653344667**************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 v+s ++++vg k+++vfy+grap+g+kt+W m+ey+ Neem_35390_f_1 101 PGLVYS-SNRAVGEKRSMVFYRGRAPNGTKTEWKMNEYK 138 **.8899*************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-46	3	144	IPR003441	NAC domain
PROSITE profile	PS51005	44.821	5	162	IPR003441	NAC domain
Pfam	PF02365	9.1E-23	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MVEEYPPGFR FYPTEEELVS FYLHNKLQGR REDLNRLMDR IIPIVNIYNY NPWDLPQFSE 60 YLCHRDPEQW FFFIPRHENE ARGGRPNRLT TAGYWKATGS PGLVYSSNRA VGEKRSMVFY 120 RGRAPNGTKT EWKMNEYKAI EGEASTSSAN APPRVNYIYV LS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-34	6	141	18	144	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-34	6	141	18	144	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-34	6	141	18	144	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-34	6	141	18	144	NO APICAL MERISTEM PROTEIN
3swm_A	5e-34	6	141	21	147	NAC domain-containing protein 19
3swm_B	5e-34	6	141	21	147	NAC domain-containing protein 19
3swm_C	5e-34	6	141	21	147	NAC domain-containing protein 19
3swm_D	5e-34	6	141	21	147	NAC domain-containing protein 19
3swp_A	5e-34	6	141	21	147	NAC domain-containing protein 19
3swp_B	5e-34	6	141	21	147	NAC domain-containing protein 19
3swp_C	5e-34	6	141	21	147	NAC domain-containing protein 19
3swp_D	5e-34	6	141	21	147	NAC domain-containing protein 19
4dul_A	5e-34	6	141	18	144	NAC domain-containing protein 19
4dul_B	5e-34	6	141	18	144	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006481732.1	2e-89	NAC domain-containing protein 90-like
Swissprot	Q9FMR3	2e-56	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2H5MYF9	4e-88	A0A2H5MYF9_CITUN; Uncharacterized protein
STRING	XP_006481732.1	7e-89	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10159	10	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	2e-51	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]