PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_35423_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family MYB_related
Protein Properties Length: 193aa    MW: 21294.5 Da    PI: 5.238
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_35423_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.5e-098302346
                     -HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                     tW++Ia+ ++ gRt++++k++w++
   Neem_35423_f_1  8 TWSAIAAQLP-GRTDNEIKNHWHT 30
                     8*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.728136IPR017930Myb domain
SuperFamilySSF466892.96E-8742IPR009057Homeodomain-like
PfamPF002494.2E-7730IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-13745IPR009057Homeodomain-like
CDDcd001676.83E-6932No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MATVTFTTWS AIAAQLPGRT DNEIKNHWHT SLKKRLKQTS VTNEAKRKPK HPIYDDIDRQ  60
GEPIASGNSQ EGESKVKVDS REGESKLNNH HLNHMITPSI LESSPSSSQP SSSDQLSSIT  120
TDTSVVSSTE LMLDNKDVLF QPYAEASGSF WTEPFLADNS FNLYISNDLL APLSSTGYAS  180
PHSSFLDGEI LWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13137LKKRLKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296898.13e-43transcription factor MYB4-like
TrEMBLA0A061E3S11e-40A0A061E3S1_THECC; Myb domain protein 15, putative
TrEMBLA0A067EX861e-40A0A067EX86_CITSI; Uncharacterized protein
STRINGEOX992622e-41(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.17e-12myb domain protein 63