PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_35587_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 206aa MW: 23286.8 Da PI: 6.8809

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35587_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.8	8.2e-08	122	157	4	39
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-ST CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKls 39 +h+ +Er RR++iN+++ L++l+P ++k s Kls Neem_35587_f_1 122 SHSLAERVRREKINERLRCLQDLVPGCYKFLSMKLS 157 8************************98655566655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.49E-9	116	161	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.34E-6	116	161	No hit	No description
PROSITE profile	PS50888	11.547	118	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.3E-9	121	159	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.3E-5	122	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSTSNLELEV FSNSSSSFFD HHQPQLCMNF ADNIQSFSHS GERGSDALNA PSLGFTADMS 60 ISDNRNNANG VHTVESLVNF STPGNNNKSL SGRKRKRNNE RVVEKPKEVI HVRAKRGQAT 120 DSHSLAERVR REKINERLRC LQDLVPGCYK FLSMKLSAAS MYYDFNSELD TTETMPGTNE 180 YEVQDMERMV REGYGGPSYF HSTWSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024951188.1	4e-96	transcription factor bHLH75-like isoform X2
Swissprot	A4D998	2e-36	BH075_ARATH; Transcription factor bHLH75
TrEMBL	V4U704	1e-93	V4U704_9ROSI; Uncharacterized protein
STRING	XP_006469087.1	8e-94	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14081	20	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25330.1	1e-38	bHLH family protein

Publications ? help Back to Top
Khan M, et al. Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling. Nat Commun, 2014. 5: p. 4687 [PMID:25134617] Eremina M, et al. Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991 [PMID:27655893] Pfannebecker KC,Lange M,Rupp O,Becker A Seed Plant-Specific Gene Lineages Involved in Carpel Development. Mol. Biol. Evol., 2017. 34(4): p. 925-942 [PMID:28087776]