PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_35590_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

bHLH

Protein Properties

Length: 295aa MW: 33117.2 Da PI: 8.1216

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35590_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.7e-10	203	250	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ +L++l+P + +k Ka +L + ++Y++sLq Neem_35590_f_1 203 SHSLAERVRREKISERMKTLQKLVPGC----DKVTGKALMLDEIINYVQSLQ 250 8***********************9....555***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-17	197	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-10	197	254	No hit	No description
PROSITE profile	PS50888	15.967	199	249	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-17	199	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-7	203	250	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.1E-11	205	255	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MAAFSYQHQY HPFLLDSVFL SSNDTNMVVE EGNFMNTNLF SQFSSPKLPL AQEINSNCHI 60 SFNPLEYGGG FANGCVDHSS SKIAAVSDNE LSSVTKNQSI LSSTVVDNCN KIAESGEQVT 120 QSTVTQMDKK RKNRNNSSSS NSAESKDLRE VKSKRQKKCN DGEKAEEEKN NPKAEKKNQK 180 KVPEEPPKDY IHVRARRGQA TDSHSLAERV RREKISERMK TLQKLVPGCD KVTGKALMLD 240 EIINYVQSLQ NQVEFLSMKL ASVNPMFYEF GMDLDAFVDR PDQVIKTTSE KKGCL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021634687.1	1e-106	transcription factor bHLH137-like
TrEMBL	A0A2C9UIY9	1e-105	A0A2C9UIY9_MANES; Uncharacterized protein
STRING	cassava4.1_023959m	1e-106	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8796	24	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	6e-55	bHLH family protein