PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3565_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 718aa MW: 80689.7 Da PI: 5.4454

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3565_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	76.6	2.9e-24	262	312	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l dl +yF+lpi++AA+++++c+Tv+K+iCR+ G+ RWPhRkiks+ Neem_3565_f_2 262 TGKLTLRDLVNYFHLPIEQAARKMQLCPTVVKKICRRDGLLRWPHRKIKSI 312 5689*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.143	250	332	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-20	264	312	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 718 aa Download sequence Send to blast
MADPRAVVPY HDPYDISYTE DIINFLNNPS PTFADLSLFE ESSLPPSSSN AHTDDIITDT 60 NDPFDDPLLW DFGNNINGGS SQAGPSENHA ETSNGGRPEI ETCADMKGFP VWPVAPVPYL 120 CSCCLVLREI IHTNGHDTTK LEIHGRLGII CHAVLEFRQS ASDVQYHMID FCKKSIESVK 180 EYLIQYCQER KQAGFFMLPD PLSVFYEAVC VGLDLDENLS TEDISQSTRA NSGTNEMHQP 240 DMEIDSGKTQ KTSLAAQVRE RTGKLTLRDL VNYFHLPIEQ AARKMQLCPT VVKKICRRDG 300 LLRWPHRKIK SIERRMSMMS ARLSSSDPEE RAVAQREIHK LREEMVAGVK QEASEEWDES 360 MPLPGDIIEG FSETNDADEF FVPAKAKSEL STQLGKINQQ VETIWLKIRR GDSIVKLRVR 420 VVQQRGSMLQ RKYTIKAARD DRHVAILGDL TFEQCTELQE MSRKVVNVNC RGFSKRGVKY 480 DWKMKVATYL PDQRSPVVSS ILFPPLQVEY SLEATTARCM SWFSAAVSSG VPLVFVNIQT 540 EQILTSERTN FPGRELTWGR QQNHATTMQI VQGIRLWFLP GVAEVLLEMT PEPGEARFGM 600 DIKQTEEGFI FVYSVARGSA ADRAGMRHLY EEANATGYLL VISRLEGKSV MPSGGSCEGL 660 LHCCDHNELR ETLTSAIDQM EGIQLHIMVW PSQTRPAITP ATAETLLPPI STHSQPPL

Sequence ? help Back to Top

Protein Sequence Length: 718 aa Download sequence Send to blast

MADPRAVVPY HDPYDISYTE DIINFLNNPS PTFADLSLFE ESSLPPSSSN AHTDDIITDT  60
NDPFDDPLLW DFGNNINGGS SQAGPSENHA ETSNGGRPEI ETCADMKGFP VWPVAPVPYL  120
CSCCLVLREI IHTNGHDTTK LEIHGRLGII CHAVLEFRQS ASDVQYHMID FCKKSIESVK  180
EYLIQYCQER KQAGFFMLPD PLSVFYEAVC VGLDLDENLS TEDISQSTRA NSGTNEMHQP  240
DMEIDSGKTQ KTSLAAQVRE RTGKLTLRDL VNYFHLPIEQ AARKMQLCPT VVKKICRRDG  300
LLRWPHRKIK SIERRMSMMS ARLSSSDPEE RAVAQREIHK LREEMVAGVK QEASEEWDES  360
MPLPGDIIEG FSETNDADEF FVPAKAKSEL STQLGKINQQ VETIWLKIRR GDSIVKLRVR  420
VVQQRGSMLQ RKYTIKAARD DRHVAILGDL TFEQCTELQE MSRKVVNVNC RGFSKRGVKY  480
DWKMKVATYL PDQRSPVVSS ILFPPLQVEY SLEATTARCM SWFSAAVSSG VPLVFVNIQT  540
EQILTSERTN FPGRELTWGR QQNHATTMQI VQGIRLWFLP GVAEVLLEMT PEPGEARFGM  600
DIKQTEEGFI FVYSVARGSA ADRAGMRHLY EEANATGYLL VISRLEGKSV MPSGGSCEGL  660
LHCCDHNELR ETLTSAIDQM EGIQLHIMVW PSQTRPAITP ATAETLLPPI STHSQPPL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024953682.1	0.0	uncharacterized protein LOC102610568
TrEMBL	A0A2N9J811	0.0	A0A2N9J811_FAGSY; Uncharacterized protein
STRING	XP_006453028.1	0.0	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	9e-11	RWP-RK domain-containing protein