PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_35884_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

G2-like

Protein Properties

Length: 177aa MW: 20210.5 Da PI: 7.1279

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_35884_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	38.9	1.9e-12	65	89	2	26
G2-like 2 prlrWtpeLHerFveaveqLGGsek 26 prlrWtp+LH rFv+ave+LGG++ Neem_35884_f_1 65 PRLRWTPDLHLRFVHAVEKLGGQDM 89 8*********************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-12	61	121	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence Send to blast
MDGSGRTEGS KTSPSNQIQQ ESESEENDEH ESNKPKNGGS SSNSTVEENE QKKPSVRPYV 60 RSKMPRLRWT PDLHLRFVHA VEKLGGQDMM ADHRHLVESG DRNIYNLSQL PMLQGYNCQS 120 HSSSFRYGDA SWSAAREYLM RSSCVSRSLI DETRPRLYVS EWVILLMVQI QFGKCLN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006429461.1	3e-73	putative Myb family transcription factor At1g14600
Refseq	XP_006481085.1	3e-73	putative Myb family transcription factor At1g14600
TrEMBL	A0A2H5MXL0	7e-72	A0A2H5MXL0_CITUN; Uncharacterized protein
TrEMBL	V4SZQ4	7e-72	V4SZQ4_9ROSI; Uncharacterized protein
STRING	XP_006481085.1	1e-72	(Citrus sinensis)
STRING	XP_006429461.1	1e-72	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	4e-32	G2-like family protein