PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_3603_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

WOX

Protein Properties

Length: 221aa MW: 25287.5 Da PI: 5.7185

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_3603_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.7	5.3e-20	90	150	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le ++e+ + +p +++++e+A++l ++e++V++WFqNrRa+ k+ Neem_3603_f_2 90 RQRWTPTSAQLQILECVYEEcKGTPGKQKIQEIAAELtqhgPISETNVYNWFQNRRARLKR 150 89***************9889*************99**************997 PP
2	Wus_type_Homeobox	90.1	2.2e-29	89	152	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPt+ Q++iLe +y++ tP k++iq+i+aeL+++G i+++NV++WFQNr+aR ++kq Neem_3603_f_2 89 ARQRWTPTSAQLQILECVYEECKGTPGKQKIQEIAAELTQHGPISETNVYNWFQNRRARLKRKQ 152 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-17	83	155	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.042	86	151	IPR001356	Homeobox domain
SMART	SM00389	2.8E-15	88	155	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.58E-17	89	153	IPR009057	Homeodomain-like
CDD	cd00086	4.05E-13	90	152	No hit	No description
Pfam	PF00046	7.5E-18	90	150	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MEWQNFQQQL QGGEMRVENQ SGSGGLCVKV MTDEQLELLR KQISVYASIC EQLVQMHKIF 60 SAQHEITGMR MGNPYYDPFV ASGGQKITAR QRWTPTSAQL QILECVYEEC KGTPGKQKIQ 120 EIAAELTQHG PISETNVYNW FQNRRARLKR KQSSSLPNNG ESETETPFES RMKNPESIQS 180 FENLNLQSPA DTGIDQMIAK MEIPGSFSFQ WQVERYHDML G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	151	RRARLKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006435385.1	1e-113	WUSCHEL-related homeobox 13
Refseq	XP_006473808.1	1e-113	WUSCHEL-related homeobox 13
Swissprot	Q5QMM3	4e-62	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A067GZW5	1e-111	A0A067GZW5_CITSI; Uncharacterized protein
TrEMBL	V4TAU1	1e-111	V4TAU1_9ROSI; Uncharacterized protein
STRING	XP_006473808.1	1e-112	(Citrus sinensis)
STRING	XP_006435385.1	1e-112	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17223	6	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	1e-58	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]