PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3605_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 108aa    MW: 12164.1 Da    PI: 10.7202
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3605_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.6e-1131711055
                   HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                   r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Neem_3605_f_1 31 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 71
                   9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-152088IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.2242170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-132682IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-112776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-103075No hitNo description
PfamPF000101.3E-83171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MSSKGKAAVN LNGKTRASRG SATDPQSLYA RKRRERINER LRILQNLVPN GTKVDISTML  60
EEAVQYVKFL QLQIKLLSSD ELWMYAPIAY NGMNIGLDHL KITASRLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034827.13e-64transcription factor bHLH84
RefseqXP_024957794.12e-64transcription factor bHLH84
SwissprotQ7XHI91e-58BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A067F3177e-63A0A067F317_CITSI; Uncharacterized protein
TrEMBLA0A2H5P8R37e-63A0A2H5P8R3_CITUN; Uncharacterized protein
STRINGXP_006487068.11e-63(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-47bHLH family protein