PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3608_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GATA
Protein Properties Length: 390aa    MW: 42578.5 Da    PI: 5.3366
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3608_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA45.51e-14199233133
           GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkk 33 
                    C++Cg +   Tp +Rrgp g++tLCnaCGl+++ k
  Neem_3608_f_1 199 CQHCGISAklTPAMRRGPAGPRTLCNACGLMWANK 233
                    *****9999***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009792.4E-56398IPR010399Tify domain
PROSITE profilePS5132012.2496398IPR010399Tify domain
PfamPF062006.0E-96697IPR010399Tify domain
PROSITE profilePS5101713.056131173IPR010402CCT domain
PfamPF062034.4E-15131173IPR010402CCT domain
SMARTSM004012.8E-7193246IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-9194239No hitNo description
Gene3DG3DSA:3.30.50.107.0E-13198233IPR013088Zinc finger, NHR/GATA-type
PfamPF003202.2E-12199234IPR000679Zinc finger, GATA-type
CDDcd002021.15E-10199233No hitNo description
PROSITE patternPS003440199226IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MYAMNPRPLQ ARPYVDSEEH KPAQIPIQNG AEQGGFCESK DVEDDAGVSS VNNKSCNGGS  60
VDQSSRTSEL TIAFEGEVYV FPAVTPKKVQ ALLLLLGESD IPSTVPISDS SSQQNIMGVG  120
SASHGSKVSQ RFASLVRFRE KRKERCFEKK IRYSCRKEVA QRMQRKNGQF TSSKDSFTAS  180
VKLNPSNGTA ATESVSQMCQ HCGISAKLTP AMRRGPAGPR TLCNACGLMW ANKMVIDSEP  240
KKTKEGTGPK STPELANFYS PWGKNFIPQI VRNQAPCTHG GFLGTLKDLT KGGRSTCFEQ  300
NEQGTPGDIK PATMEPESSY ANQDEQGSPN EMKPMLFDPQ SHSMRPNEQD LQEAIDELAN  360
ASGSDFEIPA NFDEQVDVDD SNLGTDWLDT
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006423708.11e-174GATA transcription factor 19
SwissprotQ8GXL75e-56GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A067EJ961e-179A0A067EJ96_CITSI; Uncharacterized protein
TrEMBLA0A2H5PYB81e-179A0A2H5PYB8_CITUN; Uncharacterized protein
STRINGXP_006423708.11e-173(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122941429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.26e-49ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]