PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_36093_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 187aa    MW: 20869.6 Da    PI: 4.8315
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_36093_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000541371655
                    HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +N+ ++ Lr+l+P++   + ++ + a+i    ++++k+L+
  Neem_36093_f_2  1 MNEYLAVLRSLMPPS---YVQRGDQASIIGGSINFVKELE 37
                    8**************...9****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.5E-6151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.2E-8152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.43E-5141No hitNo description
PROSITE profilePS5088810.271136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MNEYLAVLRS LMPPSYVQRG DQASIIGGSI NFVKELEQLL QSMEAQKRNT PQHSDNGLSS  60
TFSDFFTFPQ YSTCATQNNN SFPGEKDSNT TENVADIEAD IEVNMAESHA NIKILTKKRP  120
RQLLKMVASF QNLRLSILHL NVTTIDQTVL YSVSVKVEEG CQLNTVDEIA AAVHQILLKI  180
QEEAAFC
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006472540.11e-103transcription factor bHLH96-like
SwissprotQ9C7T41e-69BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A067GQU91e-99A0A067GQU9_CITSI; Uncharacterized protein
STRINGXP_006472540.11e-102(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-72bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]