PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3615_f_8
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family HB-PHD
Protein Properties Length: 739aa    MW: 82581.2 Da    PI: 8.1913
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3615_f_8genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-095205591453
                    HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
       Homeobox  14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     L ++F++n  ps+  +e L+k+lgL+ ++V  WF+N R+
  Neem_3615_f_8 520 KLRQVFAENELPSRVVKENLSKELGLEAEKVNKWFKNARY 559
                    6999**********************************97 PP
2PHD34.64.3e-12238293151
                    SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
            PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                    +C+ C+   +  ++++vlCd +C+ +fH+kCl+++l++e++p g   w+C+ C++k
  Neem_3615_f_8 238 ICAKCKLreAFPDNDIVLCDgTCNCAFHQKCLDPPLDTESIPPGdqGWFCRFCECK 293
                    588888854455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.02E-13230296IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.0E-11234294IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.06236293IPR019787Zinc finger, PHD-finger
SMARTSM002491.2E-7238291IPR001965Zinc finger, PHD-type
PfamPF006281.4E-9238293IPR019787Zinc finger, PHD-finger
CDDcd155044.20E-30239290No hitNo description
PROSITE patternPS013590239290IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003895.1E-4506568IPR001356Homeobox domain
CDDcd000865.27E-7519559No hitNo description
SuperFamilySSF466899.41E-8519565IPR009057Homeodomain-like
PfamPF000464.4E-7520559IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.7E-9520558IPR009057Homeodomain-like
PROSITE profilePS5007110.867521564IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 739 aa     Download sequence    Send to blast
MFVIWTLRID SNECQNSVIV IYGSQYVIFL NIFVNVPNLI LLSFSVRSCN SSGSISGVGA  60
CDITGNNCCS SIGNFNAKNN MPGTGKKVVI HPESGKSCFP KKETGSELIA SLKFKKDSKI  120
LKSKKLKSKS KCHSKTINSA PLERTVAESP SKGTKDDSGK SRLLEQNLID AYSGEGWKGQ  180
SREKIKPEKE LQRAKKEILK CKLGIRDAIR QLDSLSSVGC IEGSVIAADG SVHHEHIICA  240
KCKLREAFPD NDIVLCDGTC NCAFHQKCLD PPLDTESIPP GDQGWFCRFC ECKMEIIEAM  300
NAHIGTSFSV SSNWQDIFKE EAAFPDGGSA LINQEEDWPS DDSEDDDYNP ERRENSCSIS  360
GAETDDDASS STSLSWSSDD GALAEIQRWE IEGNGYKNFS VDSSLGSDET SDGEIICRRR  420
QRSTVDYKKL YYEMFGKDAS AYEQVSEDED WGPAKRRRRE KESDAVNTLM TLYGSEEKCS  480
NVKTSEEKKK FPSDTRIRRP FFRIPPNAVE VVCNLILQAK LRQVFAENEL PSRVVKENLS  540
KELGLEAEKV NKWFKNARYI ALKTRKVERA KQIHNSPRIS KESRLETEKK TTAEVVALKD  600
DALKETLTRT PKSSKNIHQQ KDSKSLSESL KKNQHQRASV GSPVNASNQA SIELSDDMSL  660
KKLLIAKSKK GKKANFIAQD GSQAAEAEME RLCRATGRLE NLKQKLSRLK SENARKYNKN  720
QLNDESVIYV PVAELREKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1455460RRRREK
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006474260.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_006474261.10.0pathogenesis-related homeodomain protein isoform X1
RefseqXP_024048235.10.0pathogenesis-related homeodomain protein isoform X1
SwissprotP487851e-152PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLV4U0X90.0V4U0X9_9ROSI; Uncharacterized protein
STRINGXP_006474260.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.21e-145pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]