PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_3627_f_7
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family CO-like
Protein Properties Length: 462aa    MW: 52009.5 Da    PI: 7.0987
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_3627_f_7genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-061244335
       zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                      C+ ++e+ + l+C+ ++  lC  C ++ H+
  Neem_3627_f_7 12 SVPCDFCSEQIAVLYCRADSAKLCLFCDQHVHS 44
                   568**************************9995 PP
2zf-B_box25.82.1e-0855100342
       zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                     ++C+++++++++  C +++  lC++C    H +      H++vp+
  Neem_3627_f_7  55 SQICDNCSNEPVSVRCVTDNLVLCQECDWDAHGScsvsasHDRVPI 100
                    579**************************99*55999999999987 PP
3CCT64.92.4e-22414457144
            CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                    R +a++RYkeK+ktR+++K+irYesRKa+A++R+RvKGrFvk++
  Neem_3627_f_7 414 RGNAMQRYKEKKKTRRYDKHIRYESRKARADTRKRVKGRFVKAS 457
                    7789**************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.7271057IPR000315B-box-type zinc finger
SMARTSM003361.2E-111057IPR000315B-box-type zinc finger
CDDcd000217.56E-71345No hitNo description
PROSITE profilePS5011910.36753100IPR000315B-box-type zinc finger
PfamPF006432.8E-656100IPR000315B-box-type zinc finger
CDDcd000218.84E-857100No hitNo description
SMARTSM003360.1658100IPR000315B-box-type zinc finger
PfamPF062031.8E-16414456IPR010402CCT domain
PROSITE profilePS5101714.912414456IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MVSPKSERKK ESVPCDFCSE QIAVLYCRAD SAKLCLFCDQ HVHSANLLSK KHLRSQICDN  60
CSNEPVSVRC VTDNLVLCQE CDWDAHGSCS VSASHDRVPI EGFSGCPSAL ELASLWGFDF  120
EDKKLNETSS FSDYWNACQD FEASWLYKTN GMSVQDLMVP NEKGVFFNGD VMSMSKRQNP  180
SCGKLKQTLQ QQTPFTSLLM MQGQMGSKEN DSVVEGWDGH SGSQGLQIWD FNLGRLRGNE  240
ECSQLEVAYG ASDAVFMIKN FSELMKETPL TNTEMFGEMY QMNCTITHDD MASFNHNYIF  300
GINVIVTEYR RVVWHKLLNI EVVALSQNSI INSHHDLYEY VNNSNNPTAS QGPATSESNN  360
LPIARPSSGL AYGKPKGSTS SRHIQFDRPF LLTNDGMRTA ATTKADLDLL AQNRGNAMQR  420
YKEKKKTRRY DKHIRYESRK ARADTRKRVK GRFVKASDAP DG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017971792.11e-174PREDICTED: zinc finger protein CONSTANS-LIKE 14
SwissprotO228006e-71COL14_ARATH; Zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A1R3JXS61e-178A0A1R3JXS6_9ROSI; Zinc finger, B-box
STRINGEOX996841e-177(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38712647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28050.11e-100B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]